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ABOUT THIS RECORD

ID: MNEST003821
species: Oryza sativa
miRNA family: MIR446
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CATCAATATGAATGTGGGAAA

miRNA*
 TCTCACATTGAAATTGATGTT

mismatches: 3
bulges: 0
View larger
pre-miRNA
 ATGCCATTTCACGTACTTCCTCCGGTTTCACAATGTAAGTAATTGTAACATTTCTCACATTGAAATTGATGTTAATGAATCTATATAGATATATATGTCT
AGATTCATTAACATCAATATGAATGTGGGAAATACTAGAATGACTTATATTGTGAAACGGATGAAGTATAATTTCCGGTTT

dot-bracket secondary structure
..(((.......(((((((.((((.(((((((((((((((.(((.((..((((((((((((...(((((((((((((((((((.(((........))).)
))))))))))))))))))...))))))))))))..)).))).))))))))))))))))))).))))))).......)))..


SIMILARITIES
miRBase osa-MIR809d: 4e-54

PMRD osa-miR809d: 4e-54

microPC miR809: 5e-23		UniProt no hits

RFAM MIR1122: 2e-50		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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