ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR446
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CATCAATATGAATGTGGGAAA miRNA* TCCCACATTTATATTGATGTT mismatches: 0 bulges: 0 |
pre-miRNA
ATTATACTCCCTCCGTTTCACAATATAAGTCATTGTAGTATTTCCCACATTTATATTGATGTTAATGAAACTTAAATAGATGTAGTTTCATTAACATCAA
TATGAATGTGGGAAATAATAGAATGACTTATATTGTGAAACGGAGGAAGTAGAA
dot-bracket secondary structure
....((((.(((((((((((((((((((((((((.((.((((((((((((((((((((((((((((((((((...........)))))))))))))))))
))))))))))))))))).)).))))))))))))))))))))))))).))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATTATACTCCCTCCGTTTCACAATATAAGTCATTGTAGTATTTCCCACATTTATATTGATGTTAATGAAACTTAAATAGATGTAGTTTCATTAACATCAA
TATGAATGTGGGAAATAATAGAATGACTTATATTGTGAAACGGAGGAAGTAGAA
dot-bracket secondary structure
....((((.(((((((((((((((((((((((((.((.((((((((((((((((((((((((((((((((((...........)))))))))))))))))
))))))))))))))))).)).))))))))))))))))))))))))).))))...
SIMILARITIES| miRBase osa-MIR809d: 4e-35 PMRD osa-miR809d: 4e-35 microPC miR446: 5e-38 | UniProt no hits RFAM MIR1122: 5e-69 | most similar mature miRNAs |
Identical with: miR446 from microPC (MNEST046468) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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