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ABOUT THIS RECORD
ID:
MNEST003823
species:
Oryza sativa
miRNA family:
MIR446
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CATCAATATGAATGTGGGAGA
miRNA*
TCCCACATTCATATTGAAGTT
mismatches:
1
bulges:
0
View larger
pre-miRNA
AACTGTACTCCCTCCATTTCACAATTTAAGTCATTCTAGCATT
TCCCACATTCATATTGAAGTT
GAGGAATGTANACATATATATCTATCTAGATTCATT
AA
CATCAATATGAATGTGGGAGA
TGCTAAAATGACTTACATTGTGGAATGGAGGAAGTATGTA
dot-bracket secondary structure
....(((((.(((((((((((((((.(((((((((.(((((((
(((((((((((((((((.(((
((.((((......................)))).))
))
).)))))))))))))))))))
))))).))))))))).))))))))))))))).)))))...
SIMILARITIES
miRBase
osa-MIR808
:
2e-52
PMRD
osa-miR808
:
2e-52
microPC
miR809
:
2e-21
UniProt
no hits
RFAM
MIR1122: 2e-50
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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