ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR446
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TATCAATATGAATGTGGGAAA miRNA* TCCCACATTTATATTGATGGA mismatches: 1 bulges: 0 |
pre-miRNA
CACTGTTTTACAATGTAAGTTATTTTAGCATCTCCCACATTTATATTGATGGAATGAATCTAGTCAAATATATATGTCTAGATTCATTAATATCAATATG
AATGTGGGAAATAATAGAATGACTCCCATTGTGAAACGGA
dot-bracket secondary structure
..(((((((((((((..((((((((((..((.(((((((((((((((((((.(((((((((((.((........)).)))))))))))..))))))))))
))))))))).))..))))))))))..))))))))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
CACTGTTTTACAATGTAAGTTATTTTAGCATCTCCCACATTTATATTGATGGAATGAATCTAGTCAAATATATATGTCTAGATTCATTAATATCAATATG
AATGTGGGAAATAATAGAATGACTCCCATTGTGAAACGGA
dot-bracket secondary structure
..(((((((((((((..((((((((((..((.(((((((((((((((((((.(((((((((((.((........)).)))))))))))..))))))))))
))))))))).))..))))))))))..))))))))))))).
SIMILARITIES| miRBase osa-MIR809g: 1e-28 PMRD osa-miR809g: 1e-28 microPC miR809: 1e-16 | UniProt no hits RFAM MIR1122: 2e-34 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
