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ABOUT THIS RECORD
ID:
MNEST003836
species:
Oryza sativa
miRNA family:
MIR1440
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TGCTCAAATGCCACTCTCCCA
miRNA*
GGAGAGTGGTATTTGAGTGCT
mismatches:
1
bulges:
0
View larger
pre-miRNA
AATTGAAGAATTTACCATTTGTCACTCTACCAAAATACTAG
TGCTCAAATGCCACTCTCCCA
AATATTCATTCCTAAATGTCACCCGGACCTCACCACTT
ATGTTTGAATGAAAAGTGAGGCTGACATGTGCGTTCGGATGGCATTTGGGAATGAAAATTTA
GGAGAGTGGTATTTGAGTGCT
ATCATTTTGGTAGTTGC
AAATAGTAAATTCTCCCCCTA
dot-bracket secondary structure
......(((((((((.(((((.((..((((((((((..(((
(((((((((((((((((((.(
(((.(((((((((((((((((.((((((..(((..(((
((.(((.....))).)))))........))).)))))).))))))))))))))))).)))).
)))))))))))))))))))))
)..)))))))))).)))
)))).))))))))).......
SIMILARITIES
miRBase
osa-MIR1440
:
6e-23
PMRD
osa-miR1440
:
6e-23
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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