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ABOUT THIS RECORD

ID: MNEST003849
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCTATATTTTGGGACGGAGG

miRNA*
TCTGTCCCGAAATNTTACAAT

mismatches: 1
bulges: 2

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pre-miRNA
TGGTTGCATTGGTATGTACTNCCTCTGTCCCGAAATNTTACAATTTTTAGCTACGAATCTGGNCATNTAGGTGACCAGATTCATAGCTAAAAATTGCTAT
ATTTTGGGACGGAGG
TAGTACGTACTANCCATACT


dot-bracket secondary structure
.(((((...(((((((((((.(((((((((((((((..(((((((((((((((.((((((((.(((....))).)))))))).))))))))))))).)).
)))))))))))))))
.)))))))))))..)).)))



SIMILARITIES
miRBase osa-MIR1439: 5e-16

PMRD osa-miR1439: 5e-16

microPC no hits
UniProt no hits

RFAM MIR1122: 1e-50
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
Source sequences
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