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ABOUT THIS RECORD
ID:
MNEST003852
species:
Oryza sativa
miRNA family:
MIR819
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCAGGTTATAAGACTTTCTAT
miRNA*
AGAAAGTCTTATAATACAAG
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGTATTCGTCATATTTATTACTACCTCTATT
TCAGGTTATAAGACTTTCTAT
CTTGCCTACATTTATATAGATGTTAAATAATTTAGGCACATATATGTC
TAGATTCATTAACATATATATGAATGTGGGCATGCT
AGAAAGTCTTATAATACAAG
CGGAGGAAGTATTTATTTAAAAAATCAT
dot-bracket secondary structure
...........((..((.((((.(((((.((
(...((((((((((((((((.
..((((((((((((((((.(((((((..((((((((((......))))
))))))..))))))).))))))))))))))))...)
)))))))))))))))..)))
.))))).))))..))..)).........
SIMILARITIES
miRBase
osa-MIR819j
:
2e-40
PMRD
osa-miR819j
:
2e-40
microPC
miR819
:
7e-22
UniProt
no hits
RFAM
MIR1122: 6e-26
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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