miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST003856
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGACTTACATTGTGAAACAG
miRNA*
TTTTCAGGATATAAGTCATTT
mismatches:
5
bulges:
0
View larger
pre-miRNA
TGTCCTCCTCCG
TTTTCAGGATATAAGTCATTT
TAGTATTTTCCACAAAAGTATTTAAGGTTAAATAATTTAGAAAAAAAAAAAAAATTTCTAAATTCAT
TAACATCAAAATAAATATGAGAAATATTAAA
ATGACTTACATTGTGAAACAG
AGGGAGTAC
dot-bracket secondary structure
.....(((((.(
(((.((.(((.((((((((((
(((((((((.((......(((((...(((((..((((((((((...........))))))))))..)
))))....)))))....)).)))))))))))
)))))))).))).)))))).)
)))).....
SIMILARITIES
miRBase
osa-MIR809d
:
0.000000000000002
PMRD
osa-miR809d
:
0.000000000000002
microPC
miR446
:
0.0005
UniProt
no hits
RFAM
MIR1122: 2e-19
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record