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ABOUT THIS RECORD
ID:
MNEST003857
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATGACTTACATTGTGAAACAG
miRNA*
GTTTCAGAATAAGTCAGTT
mismatches:
3
bulges:
2
View larger
pre-miRNA
CAAATAATAATGTCCTTCCTCC
GTTTCAGAATAAGTCAGTT
TAGTATTTTCCACATATATATTGATGTTAATGAATCTAGATAGATATATATATGTCTAG
ATTCATTGACATCAATATAGATATGAGAAATATTAAA
ATGACTTACATTGTGAAACAG
AGGGAGTACGTACGTACGT
dot-bracket secondary structure
.........((((.(((((((.
((((((.(((((((((.((
(((((((((.((.((.((((((((((((((((((((((((((..........)))))))
))))))))))))))))))).)).)).)))))))))))
.)))))))..)).)))))).)
)))))).))))........
SIMILARITIES
miRBase
osa-MIR809a
:
1e-32
PMRD
osa-miR809a
:
1e-32
microPC
miR446
:
1e-17
UniProt
no hits
RFAM
MIR1122: 9e-34
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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