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ABOUT THIS RECORD
ID:
MNEST003862
species:
Oryza sativa
miRNA family:
MIR2504
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGACCAAATTTATAGAAAAA
miRNA*
TTTTTATAAACTTGATCAAAT
mismatches:
3
bulges:
0
View larger
pre-miRNA
GTTTGATAGTCTACCTCCTCTGTTATAATATAAGTCGTTTTGACTTTTTTCTTAGCTAAGCTTTTATAAGT
TTGACCAAATTTATAGAAAAA
TTAGCAAT
ATTTATAATATCAAATTAGTTTTATTAAACGAAACATTAAATATATTTTGATAATATATTTATTTTGTATTAAAAATGTTGCTAACT
TTTTTATAAACTT
GATCAAAT
TCTAAAAAGTTTGACCAGAAAAAAGTCGAAGTGACTTATAATATGAAACAGATGGAATAGCTCTCTGT
dot-bracket secondary structure
....((.((.(((..((((((((((((.((((((((((((((((((((((((....(((((((((...(((
((((.(((.(((((((((((.
((((((((
((((.((((((.(((...(((((.......)))))..((((((((((.....))))))))))))).)))))).)))))))))))).)
)))))))))).))
).))))))
)...)))))))))...)))))))))))))))))))))))).)))..)))))).))).))))).))...
SIMILARITIES
miRBase
sbi-MIR437r
:
0.0000009
PMRD
sbi-miR437r
:
0.0000009
microPC
miR1435
:
0.00001
UniProt
no hits
RFAM
MIR1122: 0.0003
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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