ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR818
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AATCCCTTATATTATGGGATG miRNA* TCCCATAGTATAATGGATTTT mismatches: 1 bulges: 0 |
pre-miRNA
AACTAGAGTGATACTCCCTCTATCCCATAGTATAATGGATTTTGAAAAGAAGTGATATATCTAGGACTATGAATGATAGTCATAGATACGTCGCGTCCCT
CTAGAATCCCTTATATTATGGGATGAAGGGAGTATTATGCATCG
dot-bracket secondary structure
.......((((((((((((.(((((((((((((((.((((((((....((.(((((.((((((.((((((.....)))))).)))))).))))).))...
.)))))))).))))))))))))))).))))))))))))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AACTAGAGTGATACTCCCTCTATCCCATAGTATAATGGATTTTGAAAAGAAGTGATATATCTAGGACTATGAATGATAGTCATAGATACGTCGCGTCCCT
CTAGAATCCCTTATATTATGGGATGAAGGGAGTATTATGCATCG
dot-bracket secondary structure
.......((((((((((((.(((((((((((((((.((((((((....((.(((((.((((((.((((((.....)))))).)))))).))))).))...
.)))))))).))))))))))))))).))))))))))))......
SIMILARITIES| miRBase osa-MIR818d: 0.00000003 PMRD osa-miR818d: 0.00000003 microPC no hits | UniProt no hits RFAM MIR1122: 0.000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
