ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAAGTCATTCTAGCATTTCTC miRNA* GAAATGCTAGAATGACCTGTA mismatches: 3 bulges: 0 |
pre-miRNA
AGATAAATAGTACTCCCTCCCTTTCACAATTTAAGTCATTCTAGCATTTCTCATTAACGTGAGAAATGCTAGAATGACCTGTAAAACCGAGGAAGTATCT
CTTATGGTACT
dot-bracket secondary structure
.........(((((.((((..(((.(((......((((((((((((((((((((....)))))))))))))))))))).))).)))..)))).)))))..
...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGATAAATAGTACTCCCTCCCTTTCACAATTTAAGTCATTCTAGCATTTCTCATTAACGTGAGAAATGCTAGAATGACCTGTAAAACCGAGGAAGTATCT
CTTATGGTACT
dot-bracket secondary structure
.........(((((.((((..(((.(((......((((((((((((((((((((....)))))))))))))))))))).))).)))..)))).)))))..
...........
SIMILARITIES| miRBase osa-MIR809f: 0.0000000000004 PMRD osa-miR809f: 0.0000000000004 microPC no hits | UniProt no hits RFAM MIR1122: 0.0000000000004 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
