ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf380
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CGACGTCGACGATGATGTCGT miRNA* GGCGGAGCGACGACGTTGGT mismatches: 4 bulges: 1 |
pre-miRNA
GCGGGCATCGGCGGCGGAGCGACGACGTTGGTGCTGCTGCTCCAGCAGTCGACGTCGACGATGATGTCGTCGTTCCAGA
dot-bracket secondary structure
..(((...((((((((...((.((((((((..(((((((...))))))))))))))).))....)))))))).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GCGGGCATCGGCGGCGGAGCGACGACGTTGGTGCTGCTGCTCCAGCAGTCGACGTCGACGATGATGTCGTCGTTCCAGA
dot-bracket secondary structure
..(((...((((((((...((.((((((((..(((((((...))))))))))))))).))....)))))))).)))...
SIMILARITIES| miRBase no hits PMRD osa-miRf10223-akr: 5e-36 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: osa-miRf10223-akr from PMRD (MNEST049438) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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