ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1846
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAACGAGGAGGCCGGGACCGC miRNA* GACTCCGGGCTCCTCGCCGGC mismatches: 5 bulges: 0 |
pre-miRNA
CGCTCCCTCCGCCGCATACGCCAACGAGGAGGCCGGGACCGCCGGATCGGTGACTCCGGGCTCCTCGCCGGCAGATCCGGCCCCTCTGAG
dot-bracket secondary structure
..........((((.((..(((..(((((((.(((((..(((((...)))))..))))).)))))))..)))..)).)))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGCTCCCTCCGCCGCATACGCCAACGAGGAGGCCGGGACCGCCGGATCGGTGACTCCGGGCTCCTCGCCGGCAGATCCGGCCCCTCTGAG
dot-bracket secondary structure
..........((((.((..(((..(((((((.(((((..(((((...)))))..))))).)))))))..)))..)).)))).........
SIMILARITIES| miRBase osa-MIR1846e: 1e-21 PMRD osa-miR1846e: 1e-21 microPC miR1846: 0.00000000007 | UniProt no hits RFAM MIR1846: 4e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
