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ABOUT THIS RECORD

ID: MNEST003889
species: Oryza sativa
miRNA family: MIR169
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGCCAAGGATGACTTGCCGG

miRNA*
GGCAAGTCTGTCCTTGGCTAC

mismatches: 0
bulges: 1

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pre-miRNA
GCCATGCGCTGTGAGGAGGAGAACGGGATGCAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAG
CCGGCAAGTCTGTCCTTGGCTACACCTAGCTCTCTTCTTCTAGCGTTTGGC


dot-bracket secondary structure
((((.((((((.((((((((((..(((.((.((((((((((((((((((((((((.(((..(((((...)))))(((((...))))))))..)))....)
)))))))))).)))))))))).)))))...)))))))))))))))).))))



SIMILARITIES
miRBase osa-MIR169c: 6e-59

PMRD osa-miRf10630-akr: 4e-60

microPC miR169: 5e-47
UniProt no hits

RFAM MIR169_2: 4e-60
most similar mature miRNAs

Identical with: miR169 from microPC (MNEST044916)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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