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ABOUT THIS RECORD

ID: MNEST003893
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTATATTGTGAAACGGAGGGA

miRNA*
 CCTCCGTTTCACAATGTAAGT

mismatches: 0
bulges: 0
View larger
pre-miRNA
 TTAAATAGTACTTCCTCCGTTTCACAATGTAAGTCATTCTAGTATTTCCCACATTAATATTGATGTTAATGAATCTAGACATATATTTATCTAAATTCAT
TAGCATCAATATGAATGTGGAAAATACTAGAATGACTTATATTGTGAAACGGAGGGAGTAGTTTTCT

dot-bracket secondary structure
........(((((((((((((((((((((((((((((((((((((((.(((((((.((((((((((((((((((.((((..........)))).))))))
)))))))))))).))))))).))))))))))))))))))))))))))))))))))))))).......


SIMILARITIES
miRBase osa-MIR809d: 1e-50

PMRD osa-miR809d: 1e-50

microPC miR446: 4e-23		UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.00005

RFAM MIR1122: 1e-54		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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