miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003900
species: Oryza sativa
miRNA family: MIR441
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAACATCAATATAAATGTGGA

miRNA*
 CACATTTATATTGATGTTAAT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTATTATAAGATACTCCCTCCGTTTCGCAATGTAAGTCATTCTAGTATTTCTCACATTTATATTGATGTTAATGAATCTAGACATATATATTCATTAACA
TCAATATAAATGTGGAAAATGCTAGAATGACTTAACATTGCGAAACGGAGGAAGTATATATTTAT

dot-bracket secondary structure
..........(((((.((((((((((((((((((((((((((((((((((.((((((((((((((((((((((((((.((......)).)))))))))))
))))))))))))))).))))))))))))))))).))))))))))))))))).)))))........


SIMILARITIES
miRBase osa-MIR808: 3e-36

PMRD osa-miR808: 3e-36

microPC miR809: 4e-23		UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0001

RFAM MIR1122: 3e-49		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;