ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGGGCAATGTTAGAAAGTCTT miRNA* GGCTTTCTAGCATTGCTTATA mismatches: 0 bulges: 0 |
pre-miRNA
TTATTTAGTACTTCCTCCGTTTCACGATGCAAGGCTTTCTAGCATTGCTTATATTCATTTAGATGATAATGAATCTAAACATATAAATGTGTTATATTAA
CATCTGGGCAATGTTAGAAAGTCTTATATTATGAAACGGAGGGAGTAGTAACAT
dot-bracket secondary structure
....(((.((((((((((((((((.((((.((((((((((((((((((((((((...(((((((........)))))))...)))...((((((...)))
))).))))))))))))))))))))).)))).)))))))))))))))).)))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TTATTTAGTACTTCCTCCGTTTCACGATGCAAGGCTTTCTAGCATTGCTTATATTCATTTAGATGATAATGAATCTAAACATATAAATGTGTTATATTAA
CATCTGGGCAATGTTAGAAAGTCTTATATTATGAAACGGAGGGAGTAGTAACAT
dot-bracket secondary structure
....(((.((((((((((((((((.((((.((((((((((((((((((((((((...(((((((........)))))))...)))...((((((...)))
))).))))))))))))))))))))).)))).)))))))))))))))).)))...
SIMILARITIES| miRBase osa-MIR819i: 0.000000000008 PMRD osa-miR819i: 0.000000000008 microPC miR1132: 0.0000000001 | UniProt no hits RFAM MIR1122: 2e-19 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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