ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAAGGACAGACTTGCCG miRNA* GCAAGTCATCCTTGGCTGCA mismatches: 1 bulges: 1 |
pre-miRNA
GAGCCAAACGCTAGAAGAAGAGAGCTAGGTGTAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCAATACCAGG
AGCCGGCAAGTCATCCTTGGCTGCATCCCGTTCTCCTCCTCACAGCGCATGGC
dot-bracket secondary structure
..((((..((((.((.((.((((((..((((((((((((((..((((((((((((..((....((...((((((...))))))...)).........)).
)))))))))))).))))))))))))))..)))))).)).))..))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GAGCCAAACGCTAGAAGAAGAGAGCTAGGTGTAGCCAAGGACAGACTTGCCGGCTAACTCCAAGGCGCTTCAGCAAAGCTGAGATTCCCCCAATACCAGG
AGCCGGCAAGTCATCCTTGGCTGCATCCCGTTCTCCTCCTCACAGCGCATGGC
dot-bracket secondary structure
..((((..((((.((.((.((((((..((((((((((((((..((((((((((((..((....((...((((((...))))))...)).........)).
)))))))))))).))))))))))))))..)))))).)).))..))))..))))
SIMILARITIES| miRBase osa-MIR169c: 6e-59 PMRD osa-miRf10630-akr: 4e-60 microPC miR169: 5e-47 | UniProt no hits RFAM MIR169_2: 4e-60 | most similar mature miRNAs |
Identical with: miR169 from microPC (MNEST044916) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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