ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf88
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GCCCTGTTGGTGTTATCAAGA miRNA* TTGAGGATGCCCTGGGCCA mismatches: 4 bulges: 2 |
pre-miRNA
AAGGAACACAGGCCCTGTTGGTGTTATCAAGAACAGGAGAAGCATAAAGGCAGCTTCGAGACCATCCACCTTGAGGATGCCCTGGGCCACCAATTCG
dot-bracket secondary structure
..........(((((....((((((.(((((....((.(((((.........)))))....))......))))).))))))..))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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AAGGAACACAGGCCCTGTTGGTGTTATCAAGAACAGGAGAAGCATAAAGGCAGCTTCGAGACCATCCACCTTGAGGATGCCCTGGGCCACCAATTCG
dot-bracket secondary structure
..........(((((....((((((.(((((....((.(((((.........)))))....))......))))).))))))..))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P49398|RS4_ORYSJ: 0.0000005 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
