miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST003920
species: Oryza sativa
miRNA family: MIR1094
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATCTTCGCTGTTCCACAGTCC

miRNA*
AACGGGGCGGCGGAGCTCG

mismatches: 4
bulges: 2

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pre-miRNA
GCACAAGGCTTTCTTCTCTCCATCTTCGCTGTTCCACAGTCCACACCCACGCACACAAGCAAGCGGCCTCATCTGTTTTATTGTTTTTCTTGATCCCCTT
CCCTCCATATCTCTCTCGCGCCGATCGAGAGGGGGGCGGGCGGCGGGCGGCGGCGCGCGGCGGGAGCATGCGCGAGTAGGTTGGTAGATGAGGGCGGAAC
CCTTCAGTGCTGACGGGAACGGGGCGGCGGAGCTCGCGGGGAGCATACCGGCGC


dot-bracket secondary structure
((.....)).......(((((..((((((((((((....(((...(((.((...((((..((((((......))))))..))))......))..(((((.
((((((...((((..(((...)))..)))))))))).))).)).)))..((..((((((((....)).)))))).))..(((((((..((((((......
)))))).))))))).)))..)))))))))))).....)))))((......))..



SIMILARITIES
miRBase no hits

PMRD no hits

microPC no hits
UniProt no hits

RFAM no hits
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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