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ABOUT THIS RECORD
ID:
MNEST003928
species:
Oryza sativa
miRNA family:
MIRf541
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GGACCCATATGTCAGTGACCC
miRNA*
GTCCCTGCCATGTGGGACCCA
mismatches:
5
bulges:
0
View larger
pre-miRNA
CGCCTATTACGAATACCTTGGTTGGGATGAGTCTCCTCTTTAAGTAAAGTTAGAGGGACATT
GTCCCTGCCATGTGGGACCCA
CAAAGGTT
GGACCCATA
TGTCAGTGACCC
ATGTCTCTCTGACTTTACGTCAGAGGAGCGCGATCTCTTGGTTTGGGTAAATGTGTAGA
dot-bracket secondary structure
......(((((..(((((.....(((((..(((((((((....((((((((((((((((((.
(((.(((.((((((((.((.(
(....)).
)).))))))
)).))).)))..
))))))))))))))))))...))))))).)).))))).......)))))....))))).
SIMILARITIES
miRBase
no hits
PMRD
osa-miRf11682-akr
:
2e-16
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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