ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGTAAGTCATTCTAGCATGT miRNA* ATGGTAAAATGACGTTATATTA mismatches: 3 bulges: 1 |
pre-miRNA
TGCGTTTCACAATGTAAGTCATTCTAGCATGTCCCAGATTTATATTGATGGTAATGAATCTAGACATATATAGTTATCTGGATTCATTAGCAGTCGATAT
GGAATGTGGGAAATGGTAAAATGACGTTATATTATGAGACGG
dot-bracket secondary structure
..(((((((.(((((((((((((.((.(((.(((((.((((((((((((..(((((((((((((............)))))))))))))...))))))))
.)))).))))).))).)).)))))).))))))).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGCGTTTCACAATGTAAGTCATTCTAGCATGTCCCAGATTTATATTGATGGTAATGAATCTAGACATATATAGTTATCTGGATTCATTAGCAGTCGATAT
GGAATGTGGGAAATGGTAAAATGACGTTATATTATGAGACGG
dot-bracket secondary structure
..(((((((.(((((((((((((.((.(((.(((((.((((((((((((..(((((((((((((............)))))))))))))...))))))))
.)))).))))).))).)).)))))).))))))).))))))).
SIMILARITIES| miRBase osa-MIR441c: 9e-30 PMRD osa-miR441c: 9e-30 microPC miR809: 0.0000000000001 | UniProt no hits RFAM MIR1122: 4e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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