ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATAAGTCATTCTAGCATTT miRNA* ATACTAAAATGACTTACATTG mismatches: 3 bulges: 0 |
pre-miRNA
GCCTCCAAACATCTACTCCCTTCGTTTCACAATATAAGTCATTCTAGCATTTTTCACATTCATATTTATATTAATGAATCTAAACATATATCTATTTAAA
TTCCTCAATATCAATATAAATATGGGGAATACTAAAATGACTTACATTGGGAAACGGAGGAAGTACTGAATACTGAT
dot-bracket secondary structure
.............((((.((((((((((.((((.(((((((((.(((.((((((((.(((.(((((.(((((...((((.((((..........)))).)
)))...))))).))))).))).)))))))).))).))))))))).)))).)))))))))).))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCCTCCAAACATCTACTCCCTTCGTTTCACAATATAAGTCATTCTAGCATTTTTCACATTCATATTTATATTAATGAATCTAAACATATATCTATTTAAA
TTCCTCAATATCAATATAAATATGGGGAATACTAAAATGACTTACATTGGGAAACGGAGGAAGTACTGAATACTGAT
dot-bracket secondary structure
.............((((.((((((((((.((((.(((((((((.(((.((((((((.(((.(((((.(((((...((((.((((..........)))).)
)))...))))).))))).))).)))))))).))).))))))))).)))).)))))))))).))))............
SIMILARITIES| miRBase osa-MIR809g: 8e-31 PMRD osa-miR809g: 8e-31 microPC miR809: 6e-41 | UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0007 RFAM MIR1122: 4e-33 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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