ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATATAAGTCATTCTAGCATTG miRNA* ATGCTAAAATGATTTACATTA mismatches: 2 bulges: 0 |
pre-miRNA
TCGGTAAATTACGTACTCCCTCCGTTTCATAATATAAGTCATTCTAGCATTGTCCGTATTCATATGGATGTTAATAAATCTAGATATATAAATATGCGCA
ATGCTAAAATGATTTACATTATGAGATGGAGGAAGTACATGTGTGAAGG
dot-bracket secondary structure
............(((((.(((((((((((((((.(((((((((.(((((((((.((((((.(((((....(((.......))).))))).)))))).)))
)))))).))))))))).))))))))))))))).)))))...........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCGGTAAATTACGTACTCCCTCCGTTTCATAATATAAGTCATTCTAGCATTGTCCGTATTCATATGGATGTTAATAAATCTAGATATATAAATATGCGCA
ATGCTAAAATGATTTACATTATGAGATGGAGGAAGTACATGTGTGAAGG
dot-bracket secondary structure
............(((((.(((((((((((((((.(((((((((.(((((((((.((((((.(((((....(((.......))).))))).)))))).)))
)))))).))))))))).))))))))))))))).)))))...........
SIMILARITIES| miRBase osa-MIR808: 3e-17 PMRD osa-miR808: 3e-17 microPC miR809: 0.000000008 | UniProt sp|Q6K1U0|P2C17_ORYSJ: 0.0003 RFAM MIR1122: 3e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
