miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST003935
species:
Oryza sativa
miRNA family:
MIRf341
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTTCTAGCATTGCCCATATG
miRNA*
TGTGGGTAATGCTATAACGTC
mismatches:
3
bulges:
0
View larger
pre-miRNA
AGCGCTACTCCCTCCGTTTCATAATATAAGA
CTTTCTAGCATTGCCCATATG
TATATATATGTCTAGATTCATTAACATCTATATGAATATATGAA
TGTG
GGTAATGCTATAACGTC
TTACATTATAAAACGGAGGAAGTAACTA
dot-bracket secondary structure
.....((((.(((((((((.(((((.(((((
(.((.(((((((((((((((.
(((((((.(((.(((((........))))).))).))))))).)
))))
)))))))))).)).)))
))).))))).))))))))).))))....
SIMILARITIES
miRBase
osa-MIR819a
:
5e-16
PMRD
osa-miR819a
:
5e-16
microPC
miR1130
:
0.0000000000001
UniProt
no hits
RFAM
MIR1122: 7e-25
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record