ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTTCTAACATTGCCCACATT miRNA* TGTGAACAATGCTANGAAATCT mismatches: 5 bulges: 1 |
pre-miRNA
CTAACTACTCCCTCCGTTTCATATTATAAAACTTTCTAACATTGCCCACATTTATATAGATATTAATGAATCTAGACATATATATGAATGTGAACAATGC
TANGAAATCTTATAAATATGAACGGATGAATACTTTCC
dot-bracket secondary structure
............((((((.((((((((((...((((.(.(((((..((((((((((((.((.((..........)).)).))))))))))))..))))).
)..))))..)))).))))))))))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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CTAACTACTCCCTCCGTTTCATATTATAAAACTTTCTAACATTGCCCACATTTATATAGATATTAATGAATCTAGACATATATATGAATGTGAACAATGC
TANGAAATCTTATAAATATGAACGGATGAATACTTTCC
dot-bracket secondary structure
............((((((.((((((((((...((((.(.(((((..((((((((((((.((.((..........)).)).))))))))))))..))))).
)..))))..)))).))))))))))))............
SIMILARITIES| miRBase osa-MIR819j: 9e-27 PMRD osa-miR819j: 9e-27 microPC miR1132: 0.000000000000002 | UniProt no hits RFAM MIR1122: 1e-26 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
