miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003946
species: Oryza sativa
miRNA family: MIR812
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAATAAAACGAATGGTCAA

miRNA*
 GATCATTCGTCTTATTCAAGA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 AAAAAGCAAATACTACCTCCATATTTTAATGTATGACGCCATTGACTTTTTGTCCAACGTTTGATCATTCGTCTTATTCAAGAAATTTATGTAATTATCA
TTTATTTTATTATGACTTGATTCGTTATCAAGTATTCTTTAAGCATGATATAAATATTTTTATATTTGCACAAAAATTTTGAATAAAACGAATGGTCAAA
CGCTGGTCGAAAAGTCAACAGCGTCATACATTACAAAACGGAGGGAGTACTTAATTAA

dot-bracket secondary structure
.......((.((((.(((((...((.(((((((((((((..(((((((((((.(((.(((((((((((((((.((((((((((..(((.(((((.(((..
..(((((((((((((((((((.....)))))))..........))))))).))))).....))).))))).)))..)))))))))).)))))))))))))
)).))).)))))))))))..))))))))))))).))...))))).)))).))......


SIMILARITIES
miRBase osa-MIR1884a: 0.000000000000001

PMRD osa-miR1884a: 0.000000000000001

microPC miR1884: 1e-42		UniProt sp|P0C282|SAP18_ORYSJ: 0.0000000007

RFAM MIR806: 6e-82		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;