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ABOUT THIS RECORD
ID:
MNEST003948
species:
Oryza sativa
miRNA family:
MIR812
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGAATAAAACGAATGGTCAA
miRNA*
GAACGTTAATCTTATTCAAAA
mismatches:
5
bulges:
0
View larger
pre-miRNA
TACTCCCTCCTTCCTTAAATATTTGACGCCGTTAACTTTTTTAAATATGTTT
GAACGTTAATCTTATTCAAAA
AATTTAAGTAATTATTAATTCTTTTCC
TATCATTTGATTCATTGTTAAATATACTACTACTACTCAAGTTTTTGAATAATATTCACAAAATTT
TTGAATAAAACGAATGGTCAA
ACATGTTTAAAAA
AGTCAACGGCATCAAATATTTAGGGACGGAGCGAAT
dot-bracket secondary structure
...((.((((.(((((((((((((((.((((((.((((((((((((((((((
((.((((....((((((((((
(.(((.((((((..(((((........
.(((....))).....)))))..))..))))(((.....)))...(((((...))))).))).)))
))))))))....)))).))))
)))))))))))))
))).)))))).))))))))))))))).)))).))..
SIMILARITIES
miRBase
osa-MIR806h
:
4e-36
PMRD
oru-miR806
:
3e-43
microPC
miR806
:
2e-32
UniProt
no hits
RFAM
MIR806: 2e-97
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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