ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf615
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ACGCGGAGGAGGTGGTGTTCT miRNA* AACGCCGCCCTCTGCGTCC mismatches: 1 bulges: 2 |
pre-miRNA
GTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCAC
dot-bracket secondary structure
((((((((...((((((((..((((((((((...(((...((.....))...)))...))))))))))))))))))))))..))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
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GTGGTGGAGCACGCGGAGGAGGTGGTGTTCTCGCCGGAGTACGAGGAGTTCGCCGTCAGGAACGCCGCCCTCTGCGTCCAGATCAC
dot-bracket secondary structure
((((((((...((((((((..((((((((((...(((...((.....))...)))...))))))))))))))))))))))..))))
SIMILARITIES| miRBase no hits PMRD osa-miRf11829-akr: 9e-35 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: osa-miRf11829-akr from PMRD (MNEST051044) |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
Source sequences
download this record
