ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1846
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTGAGGAGGCCGGGACCGCC miRNA* TGACCCCGGTCTCCTCGCCGG mismatches: 3 bulges: 0 |
pre-miRNA
CCGGATCTCCTAGTGAGGAGGCCGGGACCGCCGGATCCGGTGACCCCGGTCTCCTCGCCGGCGGATCCG
dot-bracket secondary structure
.(((((((.((.((((((((((((((..(((((....)))))..)))))))))))))).)).)))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGGATCTCCTAGTGAGGAGGCCGGGACCGCCGGATCCGGTGACCCCGGTCTCCTCGCCGGCGGATCCG
dot-bracket secondary structure
.(((((((.((.((((((((((((((..(((((....)))))..)))))))))))))).)).)))))))
SIMILARITIES| miRBase osa-MIR1846a: 4e-24 PMRD osa-miR1846e: 9e-16 microPC miR1846: 2e-23 | UniProt no hits RFAM MIR1846: 2e-32 | most similar mature miRNAs |
Identical with: miR1846 from microPC (MNEST045133) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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