ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf45
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGTTTGGGGGAGTTTCTAGCT miRNA* TTAGAATCTTCCCCAAATAGG mismatches: 3 bulges: 0 |
pre-miRNA
GCTTTCGGTCTTGTTTGGGGGAGTTTCTAGCTGCTGCAGCTTCTTCCAGGATAAACAGTCCAGCTTTTGGTCTAGATTCAGATTAGTTGTTGAATCCAGA
AAATGAACTAGAAGCCAGAAGCTGTTAAACCCAACTTTTCTAGATTCTTAGAAGCTGGTTGCCAACAAGCTGCTGCTTCTTAGAATCTTCCCCAAATAGG
CTCTTTGA
dot-bracket secondary structure
......((.((((((((((((((.((((((..((.(((((((.((...((.........((((((((((.(((.(((((((........))))))).)))
....(((((((((((.....)).(((......)))..)))))).))).))))))))))...)))).))))))).))...)))))).))))))))))))))
))......
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTTTCGGTCTTGTTTGGGGGAGTTTCTAGCTGCTGCAGCTTCTTCCAGGATAAACAGTCCAGCTTTTGGTCTAGATTCAGATTAGTTGTTGAATCCAGA
AAATGAACTAGAAGCCAGAAGCTGTTAAACCCAACTTTTCTAGATTCTTAGAAGCTGGTTGCCAACAAGCTGCTGCTTCTTAGAATCTTCCCCAAATAGG
CTCTTTGA
dot-bracket secondary structure
......((.((((((((((((((.((((((..((.(((((((.((...((.........((((((((((.(((.(((((((........))))))).)))
....(((((((((((.....)).(((......)))..)))))).))).))))))))))...)))).))))))).))...)))))).))))))))))))))
))......
SIMILARITIES| miRBase no hits PMRD osa-miRf12032-akr: 0.0000007 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
