miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003961
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
GGTTGCACTTATTTTGGGACG

miRNA*
TTTTTTAATAGATGACGCCGC

mismatches: 5
bulges: 0

View larger
pre-miRNA
CGGAAACTCATGGTTGCACTTATTTTGGGACGGAGGTAGTAAGTCATAAGTACATGATTTGAGTATTAATTTACTGTAAACTTAAAAATGAGTCTATTTG
ATTTCCTTACAAAGATTTTTGCATAGAAAATTTTTGTATGAAACGTACTCCCCTCCGTTTTTTAATAGATGACGCCGCTGATTTTT


dot-bracket secondary structure
..((((.(((((((..((.(((((..((((((((((....(((((((......)))))))((((((..(((....(((.(((((....))))).)))..)
))(((..(((((((((((((.....))))))))))))).)))..)))))).))))))))))..))))).))..)))).))).))))



SIMILARITIES
miRBase osa-MIR812a: 0.000009

PMRD osa-miRf10381-akr: 0.000009

microPC miR1439: 0.0001
UniProt no hits

RFAM MIR806: 0.0000000000008
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record





Liczniki na strone;