ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGGATGTGTCACATCTGGTAC miRNA* CCGAATGTGACATATTCTAG mismatches: 2 bulges: 0 |
pre-miRNA
CTGCACACTTTGGACCGAATGTGACATATTCTAGTACTACGAATCTGGGCTGTATGTCTAGATTCATAGTACTAGGATGTGTCACATCTGGTACTAGGTT
GGTTT
dot-bracket secondary structure
..((.((.(((((((((.(((((((((((((((((((((.((((((((((.....)))))))))).))))))))))))))))))))).)))).))))).)
)))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGCACACTTTGGACCGAATGTGACATATTCTAGTACTACGAATCTGGGCTGTATGTCTAGATTCATAGTACTAGGATGTGTCACATCTGGTACTAGGTT
GGTTT
dot-bracket secondary structure
..((.((.(((((((((.(((((((((((((((((((((.((((((((((.....)))))))))).))))))))))))))))))))).)))).))))).)
)))..
SIMILARITIES| miRBase osa-MIR1442: 0.00000002 PMRD osa-miRf11623-akr: 0.000000000001 microPC miR816: 0.000001 | UniProt no hits RFAM MIR1122: 3e-23 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
