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ABOUT THIS RECORD

ID: MNEST003998
species: Oryza sativa
miRNA family: MIRf528
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
ATAGTACTAGGATGTGTCACA

miRNA*
TGACACATTTAGTACAACGA

mismatches: 3
bulges: 1

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pre-miRNA
TGACTGCCTCCATTCCGAAAAAAATGAATCTAGGACTGGATGTGACACATTTAGTACAACGAATCTGGGACAGAGGTGTGTCTAGATTCATAGTACTAGG
ATGTGTCACA
CCAGTACTAGGTTGGTTTTTTATGGGACGGAGGGAGTAC


dot-bracket secondary structure
..(((.(((((.(((((.(((((((.(((((((.(((((.(((((((((((((((((...((((((((((((....))).)))))))))...)))))).)
))))))))))
))))).))))))).))))))).))))).))))).)))..



SIMILARITIES
miRBase osa-MIR1442: 1e-16

PMRD osa-miR1442: 1e-16

microPC miR1436: 0.0000000001
UniProt no hits

RFAM MIR1122: 1e-41
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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