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ABOUT THIS RECORD
ID:
MNEST003998
species:
Oryza sativa
miRNA family:
MIRf528
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
ATAGTACTAGGATGTGTCACA
miRNA*
TGACACATTTAGTACAACGA
mismatches:
3
bulges:
1
View larger
pre-miRNA
TGACTGCCTCCATTCCGAAAAAAATGAATCTAGGACTGGATG
TGACACATTTAGTACAACGA
ATCTGGGACAGAGGTGTGTCTAGATTC
ATAGTACTAGG
ATGTGTCACA
CCAGTACTAGGTTGGTTTTTTATGGGACGGAGGGAGTAC
dot-bracket secondary structure
..(((.(((((.(((((.(((((((.(((((((.(((((.((
(((((((((((((((...((
((((((((((....))).)))))))))
...)))))).)
))))))))))
))))).))))))).))))))).))))).))))).)))..
SIMILARITIES
miRBase
osa-MIR1442
:
1e-16
PMRD
osa-miR1442
:
1e-16
microPC
miR1436
:
0.0000000001
UniProt
no hits
RFAM
MIR1122: 1e-41
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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