miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Back to search results



ABOUT THIS RECORD

ID: MNEST003999
species: Oryza sativa
miRNA family: MIRf528
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TTGTACTAGGATGTGTCACGT

miRNA*
GTGACACATCCTAATACAACG

mismatches: 1
bulges: 0

View larger
pre-miRNA
AAGTATGCCTACTCCCTTCCATCCCCAAGAAAAAAAGGCAACCTAGTACTAGAATGTGACACATCCTAATACAACGAATCTGGACATAGAGTATGTACAG
ATTCGTTGTACTAGGATGTGTCACGTCGTAGTACGAGGTTGAGTTTTTTTTGGAATAGAGGGAGTAGATATTTACCCN


dot-bracket secondary structure
((((((..((((((((((......((((((((((....((((((.((((((..(((((((((((((((.(((((((((((((.(((((...))))).)))
)))))))))).)))))))))))))))..)))))).))))))..))))))))))....)))))))))))))))).....



SIMILARITIES
miRBase osa-MIR1862g: 0.00000000001

PMRD osa-miRf10463-akr: 0.00000000000004

microPC miR1862: 0.000009
UniProt no hits

RFAM MIR1122: 2e-25
most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record





Liczniki na strone;