miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Back to search results
ABOUT THIS RECORD
ID:
MNEST004001
species:
Oryza sativa
miRNA family:
MIRf528
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GTATTAGGATGTGTCACATCC
miRNA*
ATATGAGATATGTCCAGATTCAT
mismatches:
4
bulges:
2
View larger
pre-miRNA
CATCCATCCCATAATATAAGAGATTTTGGGTGG
ATATGAGATATGTCCAGATTCAT
T
GTATTAGGATGTGTCACATCC
AATCAAAATCTCTTATATTATG
GGACGGTG
dot-bracket secondary structure
...((.(((((((((((((((((((((((.(((
(..((.(((((((((.(((....
.
..))).))))))))).)))))
).))))))))))))))))))))
))).))..
SIMILARITIES
miRBase
osa-MIR818b
:
6e-18
PMRD
osa-miR818b
:
6e-18
microPC
miR1132
:
0.00000002
UniProt
no hits
RFAM
MIR1122: 7e-21
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record