miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

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ABOUT THIS RECORD

ID: MNEST004002
species: Oryza sativa
miRNA family: MIRf529
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
AGATTTTGGGTGGATATGAGA

miRNA*
ACATCCAATCAAAATCTCT

mismatches: 2
bulges: 2

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pre-miRNA
TCATCCATCCCATAATATAAGAGATTTTGGGTGGATATGAGATATGTCCAGATTCATTGTATTAGGATGTGTCACATCCAATCAAAATCTCTTATATTAT
GGGACGGTGG


dot-bracket secondary structure
(((.((.(((((((((((((((((((((((.((((..((.(((((((((.(((.......))).))))))))).)))))).)))))))))))))))))))
)))).)))))



SIMILARITIES
miRBase osa-MIR818b: 6e-18

PMRD osa-miR818b: 6e-18

microPC miR1132: 0.00000002
UniProt no hits

RFAM MIR1122: 7e-21
most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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