ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GTACTATGATGTGTCACATCT miRNA* ATGTGACATATTCTATTACAA mismatches: 3 bulges: 0 |
pre-miRNA
AGATACTCCCTCCGTCCAAAAGAAAAAAACGAATCTGGATATGATGTGACATATTCTATTACAATAAATCTGGATAGAGGTATGTTTAAATTCATAGTAC
TATGATGTGTCACATCTAATACTAGATTATATTTTTATGGGATGGGGAGAGTACTTAGTATCTAGA
dot-bracket secondary structure
...(((((.((((((((.....(((((....(((((((((..(((((((((((((.((.(((.((.(((.((((((......)))))).))).)).))).
)).)))))))))))))..)).)))))))...)))))...)))))))).))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
AGATACTCCCTCCGTCCAAAAGAAAAAAACGAATCTGGATATGATGTGACATATTCTATTACAATAAATCTGGATAGAGGTATGTTTAAATTCATAGTAC
TATGATGTGTCACATCTAATACTAGATTATATTTTTATGGGATGGGGAGAGTACTTAGTATCTAGA
dot-bracket secondary structure
...(((((.((((((((.....(((((....(((((((((..(((((((((((((.((.(((.((.(((.((((((......)))))).))).)).))).
)).)))))))))))))..)).)))))))...)))))...)))))))).))))).............
SIMILARITIES| miRBase osa-MIR816: 0.000000002 PMRD osa-miR816: 0.000000002 microPC miR1436: 0.0000001 | UniProt no hits RFAM MIR1122: 0.000000000003 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
