ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf528
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATTCGTAGTACTAGGATG miRNA* TTATAGTACAACGAATCTGGA mismatches: 2 bulges: 0 |
pre-miRNA
CCAAAAAGTGAATCTAGCTCTGTATGTGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAGTACTAGGATGTGTCGCATCGAGT
GTTGGTTTTTTATGGGA
dot-bracket secondary structure
(((.(((..(((((..((((...((((((((((((.((((((.(((((((((((((......))))))))))))).)))))).)))))))))))).))))
...)))))))).)))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCAAAAAGTGAATCTAGCTCTGTATGTGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAGTACTAGGATGTGTCGCATCGAGT
GTTGGTTTTTTATGGGA
dot-bracket secondary structure
(((.(((..(((((..((((...((((((((((((.((((((.(((((((((((((......))))))))))))).)))))).)))))))))))).))))
...)))))))).)))..
SIMILARITIES| miRBase osa-MIR814c: 0.000006 PMRD osa-miRf10473-akr: 0.00000009 microPC miR1436: 2e-52 | UniProt no hits RFAM MIR1122: 2e-21 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
