ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TACTCCCTCCGTCCAAAAAGT miRNA* TTTTATGGGACGGAGGGAGTGGT mismatches: 2 bulges: 2 |
pre-miRNA
ATGATATGGTCTACTCCCTCCGTCCAAAAAGTGAATCTAGCTCTGTATTTGACACATTATAGTACAACGAATCTGGATAGAAATATGTGTAGATTCGTAG
TACTAGGATGTGTCGCATCGAGTGTTGTTTTTTATGGGACGGAGGGAGTGGTAATTACTG
dot-bracket secondary structure
..........(((((((((((((((.(((((........((((.((...(((((((((.((((((.(((((((((.(((......))).))))))))).)
))))).))))))))).)).)))).....)))))...))))))))))))))).........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ATGATATGGTCTACTCCCTCCGTCCAAAAAGTGAATCTAGCTCTGTATTTGACACATTATAGTACAACGAATCTGGATAGAAATATGTGTAGATTCGTAG
TACTAGGATGTGTCGCATCGAGTGTTGTTTTTTATGGGACGGAGGGAGTGGTAATTACTG
dot-bracket secondary structure
..........(((((((((((((((.(((((........((((.((...(((((((((.((((((.(((((((((.(((......))).))))))))).)
))))).))))))))).)).)))).....)))))...))))))))))))))).........
SIMILARITIES| miRBase osa-MIR1862b: 0.0001 PMRD osa-miRf10473-akr: 0.0000005 microPC miR1436: 2e-59 | UniProt no hits RFAM MIR1122: 3e-18 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
