ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTACTCCCTCCGTCCCAAAA miRNA* ATGGGACGGAGGGAGTGGTAA mismatches: 2 bulges: 0 |
pre-miRNA
TGGATATGGTCTACTCCCTCCGTCCCAAAAGTGAATCTAGCTCTGTATGGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAGT
ACTAGGATGTGTCGCATCGAGTGTTGGTTTTTTATGGGACGGAGGGAGTGGTAATTACTG
dot-bracket secondary structure
.((..((...(((((((((((((((((.((..(((((..((((...(((((((((((.((((((.(((((((((((((......))))))))))))).))
)))).)))))))).))).))))...))))).)).)))))))))))))))))..))..)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TGGATATGGTCTACTCCCTCCGTCCCAAAAGTGAATCTAGCTCTGTATGGACACATTATAGTACAACGAATCTGGATAGAAATATGTCTAGATTCGTAGT
ACTAGGATGTGTCGCATCGAGTGTTGGTTTTTTATGGGACGGAGGGAGTGGTAATTACTG
dot-bracket secondary structure
.((..((...(((((((((((((((((.((..(((((..((((...(((((((((((.((((((.(((((((((((((......))))))))))))).))
)))).)))))))).))).))))...))))).)).)))))))))))))))))..))..)).
SIMILARITIES| miRBase ssp-MIR1128: 0.0005 PMRD osa-miRf10842-akr: 0.0000001 microPC miR1436: 6e-62 | UniProt no hits RFAM MIR1122: 7e-25 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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