ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf74
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGTACCGGTACCTCACGGTAC miRNA* ACCGTGAGGTACCGATACCTC mismatches: 2 bulges: 0 |
pre-miRNA
CCGATCATATAAACCAGATATTTGCTCCAGTCTAGCAAAAAAATATCTCGAAGTACCGGTACCTCACGGTACCAAATCATCTCTGATCACTAGATATAGC
TCGGTAGGATAGGTATCGTCAAATCCAACAATTAGAAAAGATTTAGTACCGTGAGGTACCGATACCTCAAGATATTTTTTATTTGATCGGAGCAAATCTC
TATAAACCATTATCAA
dot-bracket secondary structure
...............(((.(((((((((.(((.....(((((((((((.((.(((.((((((((((((((((.(((((...((((((.....(((.....
.(((((.......)))))....))).....))))))...))))).)))))))))))))))).))).)).)))))))))))....))).))))))))).))
)...............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGATCATATAAACCAGATATTTGCTCCAGTCTAGCAAAAAAATATCTCGAAGTACCGGTACCTCACGGTACCAAATCATCTCTGATCACTAGATATAGC
TCGGTAGGATAGGTATCGTCAAATCCAACAATTAGAAAAGATTTAGTACCGTGAGGTACCGATACCTCAAGATATTTTTTATTTGATCGGAGCAAATCTC
TATAAACCATTATCAA
dot-bracket secondary structure
...............(((.(((((((((.(((.....(((((((((((.((.(((.((((((((((((((((.(((((...((((((.....(((.....
.(((((.......)))))....))).....))))))...))))).)))))))))))))))).))).)).)))))))))))....))).))))))))).))
)...............
SIMILARITIES| miRBase no hits PMRD osa-miRf10871-akr: 3e-18 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
