ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA ATGAATGTAGGCAATGCTAAC miRNA* TAGCATTGCCCACATTCATAT mismatches: 3 bulges: 0 |
pre-miRNA
CCGTTTCAGGTTACAGGACTTTCTAGCATTGCCCACATTCATATAGATGTTAATAAATCTAAGCACACATATATGTCTATATTCATTAACATATATATGA
ATGTAGGCAATGCTAACATGAAACGGAGGAAGTACTA
dot-bracket secondary structure
((((((((((((....))))...((((((((((.(((((((((((.((((((((.(((.((.(((........))).)).))).)))))))).)))))))
)))).))))))))))...))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CCGTTTCAGGTTACAGGACTTTCTAGCATTGCCCACATTCATATAGATGTTAATAAATCTAAGCACACATATATGTCTATATTCATTAACATATATATGA
ATGTAGGCAATGCTAACATGAAACGGAGGAAGTACTA
dot-bracket secondary structure
((((((((((((....))))...((((((((((.(((((((((((.((((((((.(((.((.(((........))).)).))).)))))))).)))))))
)))).))))))))))...))))))))...........
SIMILARITIES| miRBase osa-MIR819c: 2e-46 PMRD osa-miR819c: 2e-46 microPC miR809: 5e-22 | UniProt no hits RFAM MIR1122: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
