ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTAGCATTGCCCACATTCA miRNA* AATGTAGGCAATGCTAACATG mismatches: 4 bulges: 0 |
pre-miRNA
TCCGTTTCAGGTTACAGGACTTTCTAGCATTGCCCACATTCATATAGATGTTAATAAATCTAAGCACACATATATGTCTATATTCATTAACATATATATG
AATGTAGGCAATGCTAACATGAAACGGAGGAAGTACTAG
dot-bracket secondary structure
(((((((((((((....))))...((((((((((.(((((((((((.((((((((.(((.((.(((........))).)).))).)))))))).))))))
))))).))))))))))...)))))))))...........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TCCGTTTCAGGTTACAGGACTTTCTAGCATTGCCCACATTCATATAGATGTTAATAAATCTAAGCACACATATATGTCTATATTCATTAACATATATATG
AATGTAGGCAATGCTAACATGAAACGGAGGAAGTACTAG
dot-bracket secondary structure
(((((((((((((....))))...((((((((((.(((((((((((.((((((((.(((.((.(((........))).)).))).)))))))).))))))
))))).))))))))))...)))))))))...........
SIMILARITIES| miRBase osa-MIR819c: 5e-47 PMRD osa-miR819c: 5e-47 microPC miR809: 5e-22 | UniProt no hits RFAM MIR1122: 1e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
