ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTCTAGCATTGTCTACATTCA miRNA* AATGTGGACAATATTAAAAAG mismatches: 2 bulges: 0 |
pre-miRNA
AGTACTAAAATACTTTATCTGTTTTATATTATAAGATTTTCTAGCATTGTCTACATTCATATATAGGTGCCTAGATTCATTAACATCTATATGAATGTGG
ACAATATTAAAAAGTTTTATAACCTAAAACGGAGGTAGTATATTTCATT
dot-bracket secondary structure
.........(((((...(((((((((..((((((((((((.(((.((((((((((((((((..((((((..............)))))))))))))))))
))))).))).))))))))))))..)))))))))...)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AGTACTAAAATACTTTATCTGTTTTATATTATAAGATTTTCTAGCATTGTCTACATTCATATATAGGTGCCTAGATTCATTAACATCTATATGAATGTGG
ACAATATTAAAAAGTTTTATAACCTAAAACGGAGGTAGTATATTTCATT
dot-bracket secondary structure
.........(((((...(((((((((..((((((((((((.(((.((((((((((((((((..((((((..............)))))))))))))))))
))))).))).))))))))))))..)))))))))...)))))........
SIMILARITIES| miRBase osa-MIR819a: 4e-23 PMRD osa-miR819a: 4e-23 microPC miR446: 0.0000000005 | UniProt no hits RFAM MIR1122: 7e-22 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
