ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf34
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTACATTGTGAAACGGAGGGA miRNA* CCTCCGTTTTACAATGTAAGA mismatches: 0 bulges: 0 |
pre-miRNA
GCTACTTCCTCCGTTTTACAATGTAAGACTTTCTAGCATTGCCCACATTCATTAACATCTATATATATGTGGGCAATGCTAAAAAGTCTTACATTGTGAA
ACGGAGGGAGTAG
dot-bracket secondary structure
.(((((((((((((((((((((((((((((((.(((((((((((((((....((.....)).....))))))))))))))).))))))))))))))))))
)))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GCTACTTCCTCCGTTTTACAATGTAAGACTTTCTAGCATTGCCCACATTCATTAACATCTATATATATGTGGGCAATGCTAAAAAGTCTTACATTGTGAA
ACGGAGGGAGTAG
dot-bracket secondary structure
.(((((((((((((((((((((((((((((((.(((((((((((((((....((.....)).....))))))))))))))).))))))))))))))))))
)))))))))))))
SIMILARITIES| miRBase osa-MIR441a: 6e-18 PMRD osa-miRf10787-akr: 3e-20 microPC miR1436: 8e-33 | UniProt no hits RFAM MIR1122: 5e-28 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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