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ABOUT THIS RECORD

ID: MNEST004159
species: Oryza sativa
miRNA family: MIRf34
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGGGCAATGCTAGAAAGTCTT

miRNA*
 GACTTTCTATCATTGCCTACA

mismatches: 1
bulges: 0
View larger
pre-miRNA
 TTATTACTACCTCTATTTCAGGTTATAAGACTTTCTATCATTGCCTACATTTATATAGATGGTAGATAATTTAGGCACATATATGTCTAGATTCATTAAC
ATATATATGAATGTGGGCAATGCTAGAAAGTCTTATAATACAAAGCGGAGGAAGTATTT

dot-bracket secondary structure
....((((.(((((.(((...((((((((((((((((.(((((((((((((((((((.(((.(((..((((((((((......))))))))))..))).)
)).))))))))))))))))))).))))))))))))))))...))).))))).))))...


SIMILARITIES
miRBase osa-MIR819j: 1e-47

PMRD osa-miR819j: 1e-47

microPC miR819: 1e-23		UniProt no hits

RFAM MIR1122: 8e-31		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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