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ABOUT THIS RECORD

ID: MNEST004345
species: Oryza sativa
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TGCATTTGCACCTGCACCTAC

miRNA*
AGGTGCAGAGGCAGATGCAAC

mismatches: 3
bulges: 0

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pre-miRNA
GTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGAAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTATACGCTAGCTTCTTGCACAC
AATGTTGTTCCTGGTCCCTTCCTGATCCCTAGGTGCAGAGGCAGATGCAACTGTGTCATA


dot-bracket secondary structure
..((((((.((.(((((((((..(((((((((..((.((((((..(((((((((...((....)).((((..((..((((.....)))).))..))))..
..)))))))))......))))))..))..)))))))))..))))))))).)).)))))).



SIMILARITIES
miRBase osa-MIR530: 1e-78

PMRD osa-miRf10677-akr: 3e-76

microPC miR530: 3e-76
UniProt no hits

RFAM MIR530: 0.00000001
most similar mature miRNAs

Identical with: miR1030 from microPC (MNEST044806)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence





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