ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR530
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTAC miRNA* AGGTGCCAAGGCAGATGCAAC mismatches: 5 bulges: 0 |
pre-miRNA
ATATATATAGCAAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGGAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTAT
ACGCTAGCTTCTTGCACCCATGTTGGTCCCTGGCCCCTTCCTGATCCCTAGGTGCCAAGGCAGATGCAACTGTGTCCAAAACTTTCCCATCCATCTTT
dot-bracket secondary structure
...........(((((....((.((((.((.(((((((((....(((((((..((..(((((((((.((((.((((((((.......((......))...
..)))))))).))))..))))...((((...))))..)))))..))..)))))))....))))))))).)).))))))..))))).............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence
ATATATATAGCAAAGTGATGTGTGATAGAGCTGCATTTGCACCTGCACCTACAGAGAGGGAGATGGAGCAGCAAGCTAGCAATACGTGCTTGATCGCTAT
ACGCTAGCTTCTTGCACCCATGTTGGTCCCTGGCCCCTTCCTGATCCCTAGGTGCCAAGGCAGATGCAACTGTGTCCAAAACTTTCCCATCCATCTTT
dot-bracket secondary structure
...........(((((....((.((((.((.(((((((((....(((((((..((..(((((((((.((((.((((((((.......((......))...
..)))))))).))))..))))...((((...))))..)))))..))..)))))))....))))))))).)).))))))..))))).............
SIMILARITIES| miRBase osa-MIR530: 5e-54 PMRD osa-miRf10677-akr: 7e-53 microPC miR530: 9e-74 | UniProt no hits RFAM MIR530: 0.00000001 | most similar mature miRNAs |
Identical with: miR530 from microPC (MNEST046704) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
deep sequencing data evidence
